The Ficus Genomics Database serves plant scientists by providing online access to Ficus genomic and genetic data, including assembled reference genomes, transcriptomes, and ncRNA information.
We now accept data from any investigator and aim to incorporate a much wider array of species and types of genomic and phenotypic data. Interested in contributing data? Please contact us!
Or send e-mail to : hisunpeng123@hotmail.com hisunpeng@qfnu.edu.cn
This website was originally developed by Qufu Normal University. We are expanding to a larger set of Ficus genomic resources with the support of grants:
People
- Ying Bao - PI
- Hui Yu-PI
- Lei Yang - PI and Web Technology Support and Developer
- Peng Sun-Project conductor and Main Web Developer
- Xiuxia Sun- Web Developer
- Xueying Zhu-Web Developer
- Jinghong Wei-Web Developer
- Weili Chen-Web Developer
- Han Su-Web Developer
- Fanrui Lin-Web Developer
- Fengxia Ou-Web Developer
- Lianfu Chen - Huazhong Agricultural University
- Kehan Sun - Web Technology Support and Developer
Tripal
The Fiucs Genomics Database uses Tripal, an open-source community genomics website toolkit.
Some modules used in FGD can be downloaded from Github on line.
The Staton laboratory distributes and develops Tripal modules under an open-source license. Click here to view a showcase of our Tripal modules.
Funding
This work was supported by
The National Natural Science Foundation of China (grant numbers: 32070246;31971568; 32150410364; 31630008)
The Province Natural Science Foundation of Guangdong (grants number: 2020A1515010540).
This work was also supported bythe High Performance Computing Center of Qufu Normal University , headed by Ying Bao.
Project Description
Ficus is characterized by their unique inflorescences, called figs, or syconia. Ficus embeded in FGD including:
- Ficus carica (carica)
- Ficus erecta(erecta)
- Ficus hispida (hispida)
- Ficus microcarpa (microcarpa)
- Ficus pumila (pumila)
The project is producing sequence databases for expressed genes, genetic markers, genetic linkage maps, and reference populations. These resources are being made available to the scientific community and the public through the project website (www.ficusgd.com).
All of the data generated by the project is being deposited in high-visibility public community databases, and all gene clones, libraries, and reference population DNAs will be stored and available to the public at cost. Descriptions of the resources and analyses of the results will also be published as journal articles, at national and international meetings, and through this public website. This project is providing training of undergraduate, graduate and postdoctoral students in comparative genomics, evolutionary genomics, population genetics, bioinformatics, substantive research experiences is being provided to minority undergraduate students in collaboration with the Qufu Normal University.
